Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs9315459 chr13:37562214 G/T 0.00031 176 4.17 24.47 25.87 KM Plot
PCPG rs9321285 chr6:131710889 T/C 6.55E-6 176 15.33 27.78 24.85 KM Plot
PCPG rs9321286 chr6:131711255 G/A 7.3E-6 174 15.33 28.3 24.7 KM Plot
PCPG rs9322241 chr6:150405921 A/G 1.75E-7 173 2.5 24.53 26.27 KM Plot
PCPG rs9366661 chr6:26530931 C/T 6.12E-7 178 10.68 32.6 24.53 KM Plot
PCPG rs9372684 chr6:122588481 T/C 8.92E-8 175 27.3 23.43 15.08 KM Plot
PCPG rs9375100 chr6:122442022 A/C 1.45E-5 178 25.92 24.5 10.3 KM Plot
PCPG rs9375107 chr6:122584278 C/A 5.69E-6 175 27.3 21.95 19.87 KM Plot
PCPG rs9375108 chr6:122584696 T/G 9.23E-8 175 27.3 23.43 15.08 KM Plot
PCPG rs9383963 chr6:152436158 A/G 1.33E-5 178 23.53 30.93 26.73 KM Plot
PCPG rs9388052 chr6:122587557 G/A 5.69E-6 175 27.3 21.95 19.87 KM Plot
PCPG rs9388053 chr6:122599707 T/C 8.13E-5 175 27.3 21.95 19.87 KM Plot
PCPG rs9398666 chr6:122594495 G/T 5.97E-6 174 27.3 23.43 19.87 KM Plot
PCPG rs9401500 chr6:122583369 A/C 0.000103 177 27.27 20.47 19.87 KM Plot
PCPG rs945192 chr6:150398749 T/C 3.89E-6 171 3.17 24.85 25.92 KM Plot